Lectures and seminars StratRegen Seminar Series with Jian Shu

Publications

When cellular reprogramming meets AI: towards de novo cell design.
Shu J
Nat Rev Genet 2025 Sep;26(9):585

Bering: joint cell segmentation and annotation for spatial transcriptomics with transferred graph embeddings.
Jin K, Zhang Z, Zhang K, Viggiani F, Callahan C, Tang J, Aronow BJ, Shu J
Nat Commun 2025 Jul;16(1):6618

Advancing biological understanding of cellular senescence with computational multiomics.
Li S, Agudelo Garcia PA, Aliferis C, Becich MJ, Calyeca J, Cosgrove BD, Elisseeff J, Farzad N, Fertig EJ, Glass C, Gu L, Hu Q, Ji Z, Königshoff M, LeBrasseur NK, Li D, Ma A, Ma Q, Menon V, Mitchell JT, Mora AL, Nagaraj S, Nelson AC, Niedernhofer LJ, Rojas M, Taha HB, Wang J, Wang S, Wu PH, Xie J, Xu M, Yu M, Zhang X, Zhao Y, Adams PD, Aguayo-Mazzucato C, Baker DJ, Benz C, Bernlohr DA, Bueno M, Chen J, Childs BG, Chuang JH, Chung D, Dileepan M, Ding L, Dong M, Duncan F, Enninful A, Flynn WF, Franco AC, Furman D, Garovic V, Halene S, Herman AB, Hertzel AV, Iwasaki K, Jeon H, Kang JW, Karmakar S, Kirkland JL, Korstanje R, Kummerfeld E, Lee JH, Liu Y, Lu Y, Lugo-Martinez J, Martini H, Melov S, Musi N, Passos JF, Peters ST, Rahman I, Ramasamy R, Rindone AN, Robbins PD, Robson P, Rodriguez-Lopez J, Rosas L, Rosenthal N, Schafer MJ, Schilling B, Schmidt EL, Schneider K, Sengupta K, Shu J, So PTC, Sun L, Tchkonia T, Teneche MG, Vanegas N, Wang J, Xie J, Yin S, Zhang K, Zhu Q, Fan R, 
Nat Genet 2025 Oct;57(10):2381-2394

Defining the cell and molecular origins of the primate ovarian reserve.
Wamaitha SE, Rojas EJ, Monticolo F, Hsu FM, Sosa E, Mackie AM, Oyama K, Custer M, Murphy M, Laird DJ, Shu J, Hennebold JD, Clark AT
Nat Commun 2025 Aug;16(1):7539

Spatial multiomic landscape of the human placenta at molecular resolution.
Ounadjela JR, Zhang K, Kobayashi-Kirschvink KJ, Jin K, J C Russell A, Lackner AI, Callahan C, Viggiani F, Dey KK, Jagadeesh K, Maxian T, Prandstetter AM, Nadaf N, Gong Q, Raichur R, Zvezdov ML, Hui M, Simpson M, Liu X, Min W, Knöfler M, Chen F, Haider S, Shu J
Nat Med 2024 Dec;30(12):3495-3508

Sandwiches and coffee will be provided.