Lectures and seminars CBB bioinformatics seminar with Anastasios Damdimopoulos: "An introduction to single cell sequencing analysis"

08-12-2022 12:15 pm - 1:00 pm Add to iCal
Campus Flemingsberg Neo, Erna Möller lecture hall and Zoom

Centre for bioinformatics and biostatistics presents a seminar within bioinformatics.

We will here present an overview of the single cell sequencing analysis and we will mainly focus on the 10x Chromium technique. We will talk about what is meant by "cell" in single cell sequencing and how it is defined. We will discuss about some rudimentary quality controls as well as some of the more common downstream analysis steps. We will also discuss how to perform normalization, various clustering approaches, how to identify marker genes and how to annotate cells. Finally, if the aim is to study and compare several different samples, how integration works and what to look out for.

Before the seminar, a limited number of sandwiches and drinks will be served on a “First come – first served” basis starting 12:00. Show up early and network!

The seminar is held in English.


Amanda Klein Research coordinator